IDEAL-GENOM

User Guide

  • Installation Guide
  • Getting Started
  • Configuration Guide
  • Examples

Pipelines

  • Quality Control Pipeline
  • GWAS Pipeline
  • VCF Processing Pipeline

API Reference

  • API Overview

Additional Resources

  • Frequently Asked Questions
  • Troubleshooting Guide
  • Contributing Guide
  • Changelog
IDEAL-GENOM
  • Overview: module code

All modules for which code is available

  • ideal_genom.core.cli
  • ideal_genom.core.config
  • ideal_genom.core.executor
  • ideal_genom.core.get_references
  • ideal_genom.core.pipeline
  • ideal_genom.core.utils
  • ideal_genom.gwas.gen_linear_mix_model
  • ideal_genom.gwas.gen_linear_model
  • ideal_genom.gwas.preparatory
  • ideal_genom.population.fst_stats
  • ideal_genom.population.projection
  • ideal_genom.post_imputation.vcf_process
  • ideal_genom.post_imputation.vcf_to_plink
  • ideal_genom.qc.ancestry_qc
  • ideal_genom.qc.sample_qc
  • ideal_genom.qc.variant_qc
  • ideal_genom.utilities.annotations

© Copyright 2026, Luis Giraldo González, Amabel Tenghe.

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